Index

Symbols

--add-examples sssom_pydantic-web command line option --host sssom_pydantic-web command line option --input sssom_pydantic-subset command line option --justification-policy sssom_pydantic-subset command line option --output sssom_pydantic-subset command line option --port sssom_pydantic-web command line option --prefix sssom_pydantic-subset command line option

--standardize sssom_pydantic-format command line option sssom_pydantic-subset command line option --tab sssom_pydantic-web command line option --target-prefix sssom_pydantic-subset command line option -i sssom_pydantic-subset command line option -o sssom_pydantic-subset command line option -p sssom_pydantic-subset command line option

A

append() (in module sssom_pydantic.io)

append_unprocessed() (in module sssom_pydantic.io) author (SemanticMapping attribute)

C

CachedSemanticMappings (class in sssom_pydantic.io) compress() (ExpandedRecord method) converter (SemanticMappingPack attribute)

count_entities() (in module sssom_pydantic.query) count_prefix_pairs() (in module sssom_pydantic.query) count_unique_entities() (in module sssom_pydantic.query) curate() (in module sssom_pydantic.process)

D

dump() (CachedSemanticMappings method)

E

estimate_confidence() (in module sssom_pydantic.process) exact() (SemanticMapping class method) exception (ParseError attribute) exclude_negative() (in module sssom_pydantic.process)

exclude_unsure() (in module sssom_pydantic.process) expand() (Record method) ExpandedRecord (class in sssom_pydantic.models) ExtensionDefinition (class in sssom_pydantic.api) ExtensionDefinitionRecord (class in sssom_pydantic.api)

F

filter_mappings() (in module sssom_pydantic.query) format() (in module sssom_pydantic.io) format_exception() (ParseError method)

from_bioportal() (in module sssom_pydantic.contrib.ontoportal) from_ontoportal() (in module sssom_pydantic.contrib.ontoportal) from_triple() (SemanticMapping class method)

G

get_canonical_tuple() (in module sssom_pydantic.process) get_mappings() (in module sssom_pydantic.query) get_parser() (MappingSetRecord method)

get_prefixes() (ExtensionDefinition method) (MappingSet method) (SemanticMapping method) get_quickstatements_lines() (in module sssom_pydantic.contrib.wikidata)

H

hash_mapping() (in module sssom_pydantic.api) hash_mapping_to_reference() (in module sssom_pydantic.api)

hash_triple() (in module sssom_pydantic.api) hash_triple_to_reference() (in module sssom_pydantic.api)

I

InvalidExistsActionError invert() (in module sssom_pydantic.process) invert_by_object_prefix() (in module sssom_pydantic.process)

invert_by_prefix_pair() (in module sssom_pydantic.process) invert_by_subject_prefix() (in module sssom_pydantic.process) iter_ontoportal() (in module sssom_pydantic.contrib.ontoportal)

L

line_number (ParseError attribute)

lint() (in module sssom_pydantic.io) load() (CachedSemanticMappings method)

M

mapping_set (SemanticMappingPack attribute) mapping_tool_name (SemanticMapping attribute) mappings (SemanticMappingPack attribute) MappingSet (class in sssom_pydantic.api) MappingSetRecord (class in sssom_pydantic.api) MappingTool (class in sssom_pydantic.api) model_config (ExpandedRecord attribute) (ExtensionDefinition attribute) (ExtensionDefinitionRecord attribute) (MappingSet attribute) (MappingSetRecord attribute) (MappingTool attribute) (Query attribute) (Record attribute) (SemanticMapping attribute)

module sssom_pydantic.api sssom_pydantic.contrib.ontoportal sssom_pydantic.contrib.wikidata sssom_pydantic.io sssom_pydantic.models sssom_pydantic.process sssom_pydantic.query

N

negate() (SemanticMapping method)

negated (SemanticMapping attribute)

O

object_name (SemanticMapping attribute)

open_quickstatements() (in module sssom_pydantic.contrib.wikidata)

P

paginate_mappings() (in module sssom_pydantic.query) ParseError (class in sssom_pydantic.io) PATH sssom_pydantic-format command line option

post() (in module sssom_pydantic.contrib.wikidata) predicate_name (SemanticMapping attribute) process() (ExtensionDefinitionRecord method) (MappingSetRecord method) publish() (in module sssom_pydantic.process)

Q

Query (class in sssom_pydantic.query)

R

read() (in module sssom_pydantic.io) read_and_open_quickstatements() (in module sssom_pydantic.contrib.wikidata) read_and_post() (in module sssom_pydantic.contrib.wikidata) read_iterable() (in module sssom_pydantic.io) read_to_quickstatements_lines() (in module sssom_pydantic.contrib.wikidata) read_unprocessed() (in module sssom_pydantic.io)

Record (class in sssom_pydantic.models) record_to_semantic_mapping() (in module sssom_pydantic.io) remove_redundant_external() (in module sssom_pydantic.process) remove_redundant_internal() (in module sssom_pydantic.process) review() (in module sssom_pydantic.process) row_to_record() (in module sssom_pydantic.io) row_to_semantic_mapping() (in module sssom_pydantic.io)

S

SemanticMapping (class in sssom_pydantic.api) SemanticMappingPack (class in sssom_pydantic.io) sort_mappings() (in module sssom_pydantic.query) sssom_pydantic-format command line option --standardize PATH sssom_pydantic-subset command line option --input --justification-policy --output --prefix --standardize --target-prefix -i -o -p sssom_pydantic-web command line option --add-examples --host --port --tab

sssom_pydantic.api module sssom_pydantic.contrib.ontoportal module sssom_pydantic.contrib.wikidata module sssom_pydantic.io module sssom_pydantic.models module sssom_pydantic.process module sssom_pydantic.query module stage (ParseError attribute) standardize() (SemanticMapping method) standardize_mappings() (in module sssom_pydantic.api) subject_name (SemanticMapping attribute)

T

to_dataframe() (in module sssom_pydantic.io) to_record() (ExtensionDefinition method) (MappingSet method) (SemanticMapping method)

W

write() (in module sssom_pydantic.io)

write_metadata() (in module sssom_pydantic.io) write_unprocessed() (in module sssom_pydantic.io)